This is the command bp_seqcutp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
bp_seqcut.pl
USAGE
bp_seqcut.pl [options -h,-s,-e,-f,-w] <FILES>...
bp_seqcut.pl [options -h,-f,-w] s-e <FILES>...
-h this help message
-s which residue to start cutting on
-e which residue to finish cutting on
-f format of the files, defaults to FASTA but you can specify anything supported by SeqIO from BioPerl
-w hard wrap width, this might not be supported depending on which format you are using
Description
A script to cut FASTA sequences with a given range `fastacut -s 1 -e 10 *.fasta` or
`fastacut 1-10 *.fasta`. This is just a convenience wrapper around the Bio::SeqIO module.
Useful if you wish to trim out a section of an alignment to build a profile of a specific
region of sequence.
Use bp_seqcutp online using onworks.net services