This is the command fastq_quality_filter that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
fastq_quality_filter - Filters sequences based on quality
DESCRIPTION
usage: fastq_quality_filter [-h] [-v] [-q N] [-p N] [-z] [-i INFILE] [-o OUTFILE] Part of
FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)
[-h] = This helpful help screen.
[-q N] = Minimum quality score to keep.
[-p N] = Minimum percent of bases that must have [-q] quality.
[-z] = Compress output with GZIP.
[-i INFILE]
= FASTA/Q input file. default is STDIN.
[-o OUTFILE] = FASTA/Q output file. default is STDOUT. [-v] = Verbose -
report number of sequences.
If [-o] is specified,
report will be printed to STDOUT.
If [-o] is not specified (and output goes to STDOUT), report will be printed to
STDERR.
Use fastq_quality_filter online using onworks.net services