This is the command fdnadiste that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
fdnadist - Nucleic acid sequence Distance Matrix program
SYNOPSIS
fdnadist -sequence seqsetall -method list -gamma list -ncategories integer -rate array
-categories properties [-weights properties] -gammacoefficient float
-invarfrac float -ttratio float -freqsfrom toggle -basefreq array
[-lower boolean] [-humanreadable boolean] -outfile outfile [-printdata boolean]
[-progress boolean]
fdnadist -help
DESCRIPTION
fdnadist is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Phylogeny:Molecular sequence" command group(s).
OPTIONS
Input section
-sequence seqsetall
File containing one or more sequence alignments
-method list
Default value: F84 distance model
-gamma list
Default value: No distribution parameters used
-ncategories integer
Default value: 1
-rate array
Default value: 1.0
-categories properties
File of substitution rate categories
-weights properties
Additional section
-gammacoefficient float
Default value: 1
-invarfrac float
Default value: 0.0
-ttratio float
Default value: 2.0
-freqsfrom toggle
Default value: Y
-basefreq array
Default value: 0.25 0.25 0.25 0.25
-lower boolean
Default value: N
-humanreadable boolean
Default value: @($(method)==s?Y:N)
Output section
-outfile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y
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