This is the command forge that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
forge - training program for SNAP
SYNOPSIS
forge [options] <ann> <dna> [options]
OPTIONS
-help
-verbose
-pseudocount <float>
[1] (absolute number for all models)
-pseudoCoding <float> [0.0] (eg. 0.05)
-pseudoIntron <float> [0.0]
-pseudoInter <float>
[0.0]
-min-counts
[0]
-lcmask [-fragmentN]
-utr5-length <int>
[50]
-utr5-offset <int>
[10]
-utr3-length <int>
[50]
-utr3-offset <int>
[10]
-explicit <int>
[250]
-min-intron <int>
[30]
-boost <file>
(file of ID <int>)
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