This is the command jaligner that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
jaligner - Smith-Waterman algorithm with Gotoh´s improvement
SYNOPSIS
jaligner s1 s2 matrix open extend
Or just type jaligner to see the GUI.
EXAMPLES
jaligner p53_{human,mouse}.fasta BLOSUM62 10 0.5
Homepage
http://jaligner.sourceforge.net/
September 2015 JALIGNER(1)
Use jaligner online using onworks.net services