This is the command kmc_tools-compact that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
kmc_tools-compact - remove counters of k-mers
SYNOPSIS
kmc_tools compact <inputdb> [input_params] <output>
DESCRIPTION
This command removes counters from the database and stores only k-mers.
OPTIONS
For each input there are additional parameters:
-ci<value>
exclude k-mers occurring less than <value> times
-cx<value>
exclude k-mers occurring more of than <value> times
EXAMPLE
kmc_tools compact wy_kmc2 -ci3 -cx1000 wy_kmc1
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