This is the Linux app named Athus whose latest release can be downloaded as Athus-1.8.9.2-sources.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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Athus
DESCRIPTION:
This project assists you in performing population genetic analyses by taking over the ugly, boring and error-prone data manipulation steps.
Starting from well specified input formats VCF, BED and FASTA and a unique configuration file describing data (f.e. from SNP-arrays or sequencing) as well as filtering one can create standard POPGEN formats like Eigenstrat, PEDMAP (PLINK), Treemix ...
In addition there are several utilities for
* generating VCF from SNPArray data (NCBI - GEO, Illumina call files)
* work with genetic maps ...
Audience
Science/Research
User interface
Console/Terminal, Command-line
Programming Language
Java
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/bioathus/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.