This is the Linux app named detectMITE whose latest release can be downloaded as detectMITE.20170425.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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detectMITE
DESCRIPTION:
detectMITE - a MATLAB-based tool for detecting miniature inverted repeat transposable elements (MITEs) in genomes.
[1] Who are we?
Please visit website: http://bioinfolab.miamioh.edu
[2] How to cite detectMITE?
Ye C, Ji G, Liang C (2016) detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes. Sci. Rep. 6, 19688. http://www.nature.com/articles/srep19688
Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. PLoS ONE 9(11): e113349. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113349
[3] detectMITE user manual
Please visit the Wiki page of this website.
[4] detectMITE Q&A
For Q&A, please visit the Blog page of this website.
[5] Update history
To see the update history, go to https://sourceforge.net/p/detectmite/wiki/UpdateHistory/
Features
- MATLAB-based
- Vector Calculation
Audience
Science/Research
Programming Language
MATLAB
This is an application that can also be fetched from https://sourceforge.net/projects/detectmite/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.