This is the Linux app named INTEGRATE whose latest release can be downloaded as INTEGRATE.0.2.6.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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SCREENSHOTS:
INTEGRATE
DESCRIPTION:
INTEGRATE: Calling gene fusions with exact fusion junctions and genomic breakpoints by combining RNA-Seq and WGS data.To download source code, reference manual and test case, please go to 'Files'.
Also refer to 'Wiki' for details.
Features
- High sensitivity and specificity
- Exact fusion junctions and genomic breakpoints
- Fast split-read mapping algorithm based on Burrows-Wheeler transform
This is an application that can also be fetched from https://sourceforge.net/projects/integrate-fusion/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.