This is the Linux app named MendelChecker whose latest release can be downloaded as MendelChecker_v2.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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MendelChecker
DESCRIPTION:
MendelChecker is a likelihood-based measure of Mendelian segregation of Single Nucleotide Polymorphisms (SNPs) in nuclear pedigrees. We developed this method as a quality control measure for novel variant discovery from noisy next-generation sequencing data in pedigrees, such as Restriction site-associated DNA Sequencing (RAD-seq) in non-model organisms. This method implements comparison of heterogametic vs. homogametic transmission, i.e., sex linked vs. autosomal segregation.
Features
- Measure likelihood of Mendelian transmission in pedigrees
- Autosome vs. sex chromosome assignment
- Reads standard GATK output
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/mendelchecker/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.