This is the Linux app named miniABS whose latest release can be downloaded as miniABS_0.1.0.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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miniABS
DESCRIPTION:
miniABS (mini Absolute Breast Cancer Subtyper) is an absolute, single-sample subtype classifier for breast cancer using Random Forest model of pairwise gene expression ratios (PGER) among 11 functional genes. With a systematic gene selection and reduction step, we aimed to minimize the size of gene set without losing a functional interpretability of the classifier. We validated the model performance using a large, heterogeneous cohort that consists of multiple public datasets across four different platforms. We anticipate that the high accuracy and reproducibility of miniABS may provide a SSP at a low cost, as well as providing a platform for cross comparison among gene expression datasets generated with different technical platforms.Features
- an absolute, single-sample subtype classifier of breast cancer with 11 functional genes
This is an application that can also be fetched from https://sourceforge.net/projects/miniabs/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.