This is the Linux app named MSP-HTPrimer whose latest release can be downloaded as msp-htprimer-cgi.zip. It can be run online in the free hosting provider OnWorks for workstations.
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SCREENSHOTS:
MSP-HTPrimer
DESCRIPTION:
MSP-HTPrimer is an open source, web-based high-throughput and genome-wide primer design pipeline for bisulfite-based assays (MSP, BSP and COBRA) and MSRE-PCR assay and capable of simultaneously processing hundreds to thousands of target sequences. MSP-HTPrimer takes genome-wide annotations of SNPs and repeats into consideration to design primer pairs for higher success rate. MSP-HTPrimer enables hierarchical filtering and visualisation of designed primers in UCSC genome browser for efficient selection of assays.Features
- BSP
- MSP
- DNA methylation
- BSP-COBRA
- MSRE
This is an application that can also be fetched from https://sourceforge.net/projects/msp-htprimer/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.