This is the Linux app named popoolationte whose latest release can be downloaded as popoolationte_1.02.zip. It can be run online in the free hosting provider OnWorks for workstations.
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popoolationte
DESCRIPTION:
PoPoolation TE is a quick and simple pipeline for the analysis of transposable element insertions in (natural) populations using next generation sequencing. PoPoolation TE calculates TE insertion frequencies for TEs that are present in the reference genome as well as for novel TE insertions.PoPoolation TE requires paired-end reads from a pooled population, a reference sequence and transposable element sequences .
Documentation: https://sourceforge.net/p/popoolationte/wiki/Main/
This is an application that can also be fetched from https://sourceforge.net/projects/popoolationte/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.