This is the Linux app named SAMMate whose latest release can be downloaded as SAMMate-2.7.4_Win64.zip. It can be run online in the free hosting provider OnWorks for workstations.
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SAMMate
DESCRIPTION:
SAMMate is a GUI software tool for processing SAM files. The software allows users to accurately estimate gene expression and isoform expression scores using short reads to generate wiggle files for visualization in UCSC genome browser and an alignment statistics report.This is an application that can also be fetched from https://sourceforge.net/projects/sammate/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.