This is the Linux app named metawatt to run in Linux online whose latest release can be downloaded as MetaWatt-3.5.3.zip. It can be run online in the free hosting provider OnWorks for workstations.
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metawatt to run in Linux online
DESCRIPTION
The Metawatt binner is a graphical binning tool that makes use of multivariate statistics of tetranucleotide frequencies and differential coverage based binning. It also performs taxonomic assessment of binning quality (via diamond BLASTx). Created bins can be edited and exported as fasta. The Metawatt is implemented in Java SWING and minimally depends on Diamond, HMMer3.1, BBMap, Prodigal and the Batik library for the export of SVG graphics.Citation: Strous M, Kraft B, Bisdorf R, TegetMeyer H (2012) The binning of metagenomic contigs for microbial physiology of mixed cultures. Frontiers in Microbial Physiology and Metabolism 3:410. doi: 10.3389/fmicb.2012.00410
Features
- Combined tetranucleotide and differential coverage binning of metagenomic contigs
- Graphical user interface for data exploration
- Taxonomic Profiling of Bins with Diamond blastp
- Detection of Conserved Single Copy Genes
- Phylogenetic Treeing of bins based on conserved genes
- Interactive GC/coverage or coverage/coverage plots
- Also runs fully automatically on the command line
Audience
Science/Research
User interface
Java Swing
Programming Language
Java
This is an application that can also be fetched from https://sourceforge.net/projects/metawatt/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
