This is the Linux app named ShettiMotif whose latest release can be downloaded as ShettiMotif_V1.zip. It can be run online in the free hosting provider OnWorks for workstations.
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SCREENSHOTS:
ShettiMotif
DESCRIPTION:
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https://sites.google.com/view/hsa23/
Short linear motifs / domains (SLiM) facilitate the functions and interactions of the proteins. Finding functional motifs in protein sequences could predict the putative cellular roles or characteristics of hypothetical proteins. ShettiMotif, which is an interactive tool to (i) searches for motifs containing repeated residues (e.g. Leu-, SR-, PEST-rich motifs, etc.), (ii) searches for multiple pre-defined consensus patterns or experimentally validated functional motifs in large datasets protein sequences (proteome-wide), (iii) map UniProt and PROSITE flat files. ShettiMotif can parse large dataset of sequences efficiently.
Article:
Haitham Sobhy; A bioinformatics pipeline to search functional motifs within whole proteome data; poxviruses a case study; Virus Genes, 2017; doi: 10.1007/s11262-016-1416-9; PMID:
This is an application that can also be fetched from https://sourceforge.net/projects/shettimotif/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.