This is the command bp_heterogeneity_testp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
bp_heterogeneity_test - a test for distinguishing between selection and population
expansion.
SYNOPSIS
heterogenetity_test -mut_1/--mutsyn synonymous_mut_count -mut_2/--mutnon nonsyn_mut_count
-s/--smaplesize sample_size [-i/--iterations iterations] [-o/--observed observed_D]
[-v/--verbose] [--silent ] [-m/--method tajimaD or fuD] [--precision]
DESCRIPTION
This is an implementation of the Heterogenetity test as described in Hahn MW, Rausher MD,
and Cunningham CW. 2002. Genetics 161(1):11-20.
OPTIONS
Options in brackets above are optional
-s or --samplesize samplesize
-mut_1 or --mutsyn synonymous mutation count
-mut_2 or --mutnon nonsynonmous mutation count
-i or --iterations number of iterations
-o or --observed observed D
-m or --method tajimaD or fuD for Tajima's D or Fu and Li's D
-v or --verbose print out extra verbose messages
--silent Be extra quiet
--precision Level of precision - specify the number of digits
(default 4)
AUTHOR Matthew Hahn <matthew.hahn-at-duke.edu>
For more information contact:
Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich <jason-at-bioperl-dot-org>
Use bp_heterogeneity_testp online using onworks.net services