This is the command gt-encseq-decode that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
gt-encseq-decode - Decode/extract encoded sequences.
SYNOPSIS
gt encseq decode (sequence_file|indexname)
DESCRIPTION
-mirrored [yes|no]
virtually append the reverse complement of each sequence (default: no)
-lossless [yes|no]
allow lossless original sequence retrieval (default: no)
-dir [string]
specify reading direction (fwd, cpl, rev, rcl) (default: fwd)
-singlechars [yes|no]
do not use a GtEncseqReader but access each sequence character separately (default:
no)
-seq [value]
extract sequence identified by its number (default: undefined)
-seqrange [start end]
extract multiple consecutive sequences (default: undefined)
-output [...]
specify output format (choose from fasta|concat) (default: fasta)
-range [start end]
concatenated range to extract (implies -output concat) (default: undefined)
-sepchar [string]
specify character to print as SEPARATOR (default: |)
-help
display help for basic options and exit
-help+
display help for all options and exit
-version
display version information and exit
REPORTING BUGS
Report bugs to <gt-users@genometools.org>.
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