EnglishFrenchSpanish

Ad


OnWorks favicon

gt-encseq-encode - Online in the Cloud

Run gt-encseq-encode in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command gt-encseq-encode that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


gt-encseq-encode - Encode sequence files (FASTA/FASTQ, GenBank, EMBL) efficiently.

SYNOPSIS


gt encseq encode sequence_file [sequence_file [sequence_file ...]]

DESCRIPTION


-showstats [yes|no]
show compression results (default: no)

-ssp [yes|no]
output sequence separator positions to file (default: yes)

-des [yes|no]
output sequence descriptions to file (default: yes)

-sds [yes|no]
output sequence description separator positions to file (default: yes)

-md5 [yes|no]
output MD5 sums to file (default: yes)

-clipdesc [yes|no]
clip descriptions after first whitespace (default: no)

-sat [string]
specify kind of sequence representation by one of the keywords direct, bytecompress,
eqlen, bit, uchar, ushort, uint32 (default: undefined)

-dna [yes|no]
input is DNA sequence (default: no)

-protein [yes|no]
input is protein sequence (default: no)

-plain [yes|no]
process as plain text (default: no)

-indexname [string]
specify name for index to be generated (default: undefined)

-smap [string]
specify file containing a symbol mapping (default: undefined)

-lossless [yes|no]
allow lossless original sequence retrieval (default: no)

-v [yes|no]
be verbose (default: no)

-help
display help for basic options and exit

-help+
display help for all options and exit

-version
display version information and exit

REPORTING BUGS


Report bugs to <[email protected]>.

Use gt-encseq-encode online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    rEFInd
    rEFInd
    rEFInd is a fork of the rEFIt boot
    manager. Like rEFIt, rEFInd can
    auto-detect your installed EFI boot
    loaders and it presents a pretty GUI
    menu of boot option...
    Download rEFInd
  • 2
    ExpressLuke GSI
    ExpressLuke GSI
    This SourceForge download page was to
    grant users to download my source built
    GSIs, based upon phhusson's great
    work. I build both Android Pie and
    Android 1...
    Download ExpressLuke GSI
  • 3
    Music Caster
    Music Caster
    Music Caster is a tray music player
    that lets you cast your local music to a
    Google Cast device. On the first run,
    you will need to click the arrow in your
    tas...
    Download Music Caster
  • 4
    PyQt
    PyQt
    PyQt is the Python bindings for
    Digia's Qt cross-platform
    application development framework. It
    supports Python v2 and v3 and Qt v4 and
    Qt v5. PyQt is avail...
    Download PyQt
  • 5
    Sardi
    Sardi
    Sardi is a complete restyling and
    optimisation of svg code. 6 choices for
    your applications and 10 kind of folders
    to use in your file manager. The sardi
    icons...
    Download Sardi
  • 6
    LMMS Digital Audio Workstation
    LMMS Digital Audio Workstation
    LMMS is a free cross-platform software
    which allows you to produce music with
    your computer. If you like this project
    consider getting involved in the project
    h...
    Download LMMS Digital Audio Workstation
  • More »

Linux commands

Ad