This is the command mapMers-depth that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
mapMers-depth - report information about mapping kmers to sequences
SYNOPSIS
mapMers-depth {-count|-depth|-stats} -mers MERYL -m MERSIZE -seq IN.FASTA
OPTIONS
Modes of operation
For sequence ordinal 's' and position in that sequence 'p':
-count reports the count (c) of the single kmer that starts at position (p).
Format: 's p c'
-depth reports the number (n) of kmers that span position (p).
Format: 's p n'
-stats reports the minimum (m), maximum (M), and average (a) count of all mers that span
position (p). also reports total count (t) and number of kmers (n)
Format: 's p m M a t n'
General
-m MERSIZE
-mers MERYL
meryl(1) database
-seq IN.FASTA
fasta input sequence
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