This is the command marscane that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
marscan - Finds matrix/scaffold recognition (MRS) signatures in DNA sequences
SYNOPSIS
marscan -sequence seqall -outfile report
marscan -help
DESCRIPTION
marscan is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Nucleic:Gene finding,Nucleic:Functional
sites,Nucleic:Transcription" command group(s).
OPTIONS
Input section
-sequence seqall
Output section
-outfile report
File for output of MAR/SAR recognition signature (MRS) regions. This contains details
of the MRS in normal GFF format. The MRS consists of two recognition sites, one of 8
bp and one of 16 bp on either sense strand of the genomic DNA, within 200 bp of each
other.
Use marscane online using onworks.net services