This is the command rdp-alignment that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
rdp-alignment: - Ribosomal Database Project (RDP) alignment tools package
SYNOPSIS
rdp-alignment <subcommand> <options>
DESCRIPTION
The Alignment tools package contains commands to do defined community analysis, pairwise
alignment and hidden markov model (HMMER3 models, no training).
OPTIONS
List of subcommands:
alignment-merger
- Merge alignments
pairwise-knn
- Compute k-nearest-neighbors by pairwise alignment
compare-error-type
- Detect insertion, deletion and substitution errors in sequences comparing to
reference sequences
align-nucl-to-prot
- Transfer a sequence alignment from protein sequences to nucleotide sequences
rm-partialseq
- remove partial sequences based on pairwise alignment to reference sequences
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