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BioFVM

Free download BioFVM Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named BioFVM whose latest release can be downloaded as BioFVM_V.1.1.6.zip. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named BioFVM with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

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BioFVM


DESCRIPTION

BioFVM is an open source diffusive transport solver for biological problems. It can solve for the diffusion of tens or hundreds of substrates on large 3-D domains. For simplicity, the code has minimal external dependencies.

BioFVM was first published in:

A. Ghaffarizadeh, S.H. Friedman, and P. Macklin. BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations. Bioinformatics 32(8): 1156-8, 2016.

DOI: 10.1093/bioinformatics/btv730

method paper: http://dx.doi.org/10.1093/bioinformatics/btv730



Features

  • simultaneously solve diffusion of many substrates
  • powerful even on desktop workstations
  • OpenMP parallelization
  • cross-platform
  • minimal dependencies


Audience

Science/Research, Education, Developers, Engineering



Programming Language

C++


Categories

Simulations, Mathematics

This is an application that can also be fetched from https://sourceforge.net/projects/biofvm/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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