This is the Linux app named contemplate-hmm whose latest release can be downloaded as contemplate-src.0.2.tgz. It can be run online in the free hosting provider OnWorks for workstations.
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Contemplate is a bioinformatics tool for finding cis-regulatory modules (CRMs) in noncoding genomic regions using comparative sequence data.
This is an application that can also be fetched from https://sourceforge.net/projects/contemplate-hmm/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.