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COPEread

Free download COPEread Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named COPEread whose latest release can be downloaded as cope-v1.2.5.tgz. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named COPEread with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

COPEread


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DESCRIPTION

COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.The connected reads can be used in genome assembly, resequencing and transcriptome research.
The full citation:
COPE: An accurate k-mer based pair-end reads connection tool to facilitate genome assembly
Binghang Liu; Jianying Yuan; Siu-Ming Yiu; Zhenyu Li; Yinlong Xie; Yanxiang Chen; Yujian Shi; Hao Zhang; Yingrui Li; Tak-Wah Lam; Ruibang Luo
Bioinformatics (2012) 28(22): 2870-2874; doi: 10.1093/bioinformatics/bts563



Features

  • connect overlapped pair-end read


Programming Language

C++


Categories

Algorithms, Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/coperead/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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