This is the Linux app named GEPETTO - Gene Prioritization in Java whose latest release can be downloaded as README.txt. It can be run online in the free hosting provider OnWorks for workstations.
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GEPETTO - Gene Prioritization in Java
DESCRIPTION
GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein interactions, gene expression, disease-causing probabilities, genomic context).
GEPETTO is written in Java/Python and supported by an advanced modular architecture, which means that it can easily be modified and extended by the user, in order to include alternative scoring methods and new data sources. We intend to extend the system from gene-level to variant-level prioritization, by exploiting the variant data in the MSV3D database.
Contact: [email protected] or [email protected]
Audience
Science/Research, Education, Developers
User interface
Web-based, Console/Terminal, Command-line
Programming Language
Python, Java, S/R
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/gepetto/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.