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High-Throughput Tabular Data Processor

Free download High-Throughput Tabular Data Processor Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named High-Throughput Tabular Data Processor whose latest release can be downloaded as htdpinstaller.exe. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named High-Throughput Tabular Data Processor with OnWorks for free.

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- 1. Downloaded this application in your PC.

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High-Throughput Tabular Data Processor


DESCRIPTION

HIGH-THROUGHPUT TABULAR DATA PROCESSOR (HTDP) is Java application that is intended to facilitate data exploration and reduction tasks in large text files resulting from high throughput technologies, e.g. massively parallel sequencing or microarrays. The software has been optimized for microarray and deep parallel sequencing data, however it can accept any character delimited tabular data sets. HTDP can also import, process and convert Variant Call Format (VCF) files ver. 4.0, 4.1 and 4.2 (http://samtools.github.io/hts-specs/VCFv4.2.pdf).
HTDP provides quick filtering functionality and can process data consisting of single or multiple input files.

Citation: Madanecki P, Bałut M, Buckley PG, Ochocka JR, Bartoszewski R, Crossman DK, et al. (2018) High-Throughput Tabular Data Processor – Platform independent graphical tool for processing large data sets. PLoS ONE 13(2): e0192858. https://doi.org/10.1371/journal.pone.0192858



Features

  • works on any character-delimited column data (e.g. BED, GFF, GTF, WIG, VCF)
  • merge tabular data files vertically and horizontally
  • merge any tabular data files using genome location or common column(s)
  • unlimited filtering and data reduction capabilities
  • different files with regards to format and content can be analyzed at the same time


Programming Language

Java


Categories

Scientific/Engineering, Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/htdp/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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