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MARAGAP

Free download MARAGAP Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named MARAGAP whose latest release can be downloaded as Data-Maragap.rar. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named MARAGAP with OnWorks for free.

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MARAGAP


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DESCRIPTION

This paper presents `MARAGAP', a reference assisted genome assembly pipeline. MARAGAP uses the principle of Minimum Description Length to determine the optimal reference sequence for the assembly. The optimal reference sequence is used as a template to infer inversions, insertions, deletions and SNPs in the target genome. MARAGAP uses an algorithmic approach to detect and correct inversions and deletions, a De-Bruijn graph based approach to infer the insertions, an affine-match affine-gap local alignment tool to estimate the locations of those insertions and a Bayesian estimation framework for SNPs.



This is an application that can also be fetched from https://sourceforge.net/projects/refasp/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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