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misc genomics tools

Free download misc genomics tools Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named misc genomics tools whose latest release can be downloaded as misc_genomics_tools_v0.2.zip. It can be run online in the free hosting provider OnWorks for workstations.

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misc genomics tools


DESCRIPTION

This is a collection of various programs developed in the course of a genomics project, involving the Pseudomonas strain NCIMB10586
These include
* identifying and correcting errors in an (eg) pacbio genome sequence using illumina reads
* prokaryotic sequence/genome annotation
* RNAseq analysis - normalisation and collation of multiple samples as a group
* RNAseq visualisation

All scripts are provided on a 'best efforts' basis, however due to various system changes I do not guarantee that all files are the version used in the analysis.
Also, please be aware that these were very much developed with expediency in mind - that is, the process was expected to be performed in its final form once; little care was given to optimising runtime or chaining scripts together, and sometimes external resources are accessed manually.



Features

  • Genome sequence error correction
  • Prokaryotic sequence annotation
  • RNAseq normalisation of multiple samples as a group
  • RNAseq sample series/time-course visualisation


Audience

Science/Research



Programming Language

Perl


Categories

Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/misc-genomics-tools/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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