This is the Linux app named olego to run in Linux online whose latest release can be downloaded as olego.src.v1.1.6.tgz. It can be run online in the free hosting provider OnWorks for workstations.
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olego to run in Linux online
DESCRIPTIONOLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast processing of large-scale data.
This is an application that can also be fetched from https://sourceforge.net/projects/ngs-olego/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.