This is the Linux app named PLEK whose latest release can be downloaded as PLEK.1.2.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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PLEK
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DESCRIPTION
INSTALLATIONPre-requisite:
1. Linux
2. C/C++ compiler (i.e. gcc, g++)
3. Python 2.5.0 or later versions (http://www.python.org/)
Steps:
1. Download PLEK.1.2.tar.gz from https://sourceforge.net/projects/plek/files/
and decompress it.
$ tar zvxf PLEK.1.2.tar.gz
2. Compile PLEK.
$ cd PLEK.1.2
$ python PLEK_setup.py
USAGE
python PLEK.py -fasta fasta_file -out output_file -thread number_of_threads
-minlength min_length_of_sequence -isoutmsg 0_or_1 -isrmtempfile 0_or_1
Examples:
1. $ python PLEK.py -fasta PLEK_test.fa -out predicted -thread 10
2. $ python PLEK.py -fasta PLEK_test.fa -out predicted -thread 10 -minlength 150
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Aimin Li, PhD
School of Computer Science and Engineering,
Xi'an University of Technology,
5 South Jinhua Road,
Xi'an, Shaanxi 710048, P.R China
liaiminmail AT gmail.com
emanlee815 AT 163.com
This is an application that can also be fetched from https://sourceforge.net/projects/plek/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.