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SeqSelector to run in Linux online

Free download SeqSelector to run in Linux online Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named SeqSelector to run in Linux online whose latest release can be downloaded as SeqSelector1.1b.zip. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named SeqSelector to run in Linux online with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

SeqSelector to run in Linux online


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DESCRIPTION

The SeqSelector toolset is a suite of user-friendly, platform independent python scripts to facilitate selection of sequences for targeted enrichment of next-generation libraries through hybridization-based sequence capture. The scripts require no knowledge of programming, and can be applied to genome sequences of model or non-model species. We suggest a workflow in which genes of interest are first identified from previous studies and publicly available datasets of functional gene annotation. Once a list of candidate genes has been identified, their sequences are selected from the reference genome. These sequences are used as a query during a BLAST search of the unannotated genome of a non-model species, and then the corresponding sequences are returned, which can be used to design baits for hybridization-based sequence capture.

Programming Language

Python



This is an application that can also be fetched from https://sourceforge.net/projects/seqselector/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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