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TagGraph

Free download TagGraph Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named TagGraph whose latest release can be downloaded as WindowsDockerTG.1.8.1.zip. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named TagGraph with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

SCREENSHOTS

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TagGraph


DESCRIPTION

Although mass spectrometry is well suited to identifying thousands of potential protein post-translational modifications (PTMs), it has historically been biased towards just a few. To measure the entire set of PTMs across diverse proteomes, software must overcome the dual challenges of covering enormous search spaces and distinguishing correct from incorrect spectrum interpretations. Here, we describe TagGraph, a computational tool that overcomes both challenges with an unrestricted string-based search method that is as much as 350-fold faster than existing approaches, and a probabilistic validation model that we optimized for PTM assignments. We applied TagGraph to a published human proteomic dataset of 25 million mass spectra and tripled confident spectrum identifications compared to its original analysis. We identified thousands of modification types on almost 1 million sites in the proteome.

Features

  • Defining complex proteomes with string


Audience

Education


User interface

Command-line


Programming Language

Python



This is an application that can also be fetched from https://sourceforge.net/projects/taggraph/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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