This is the Linux app named Seal whose latest release can be downloaded as seal-0.4.0-rc2.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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Seal
DESCRIPTION:
Seal is a Hadoop-based distributed short read alignment and analysis toolkit. Currently Seal includes tools for: read demultiplexing, read alignment, duplicate read removal, sorting read mappings, and calculating statistics for empirical base quality recalibration. Seal scales, easily handling TB of data.Features
- short read alignment (based on BWA)
- duplicate read identification
- sort read mappings
- calculate empirical base quality recalibration tables
- fast, scalable, reliable (runs on Hadoop)
This is an application that can also be fetched from https://sourceforge.net/projects/biodoop-seal/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.