This is the command extractUnmappedSubreads that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
extractUnmappedSubreads.py - Extract unmapped subreads from a fasta file
DESCRIPTION
usage: extractUnmappedSubreads.py [-h] [--verbose] [--version] [--profile]
[--debug]
fasta cmp.h5 [cmp.h5 ...]
Extract unmapped subreads from a fasta file.
positional arguments:
fasta a fasta file containing all subreads.
cmp.h5 input cmp.h5 files.
optional arguments:
-h, --help
show this help message and exit
--verbose, -v
Set the verbosity level (default: None)
--version
show program's version number and exit
--profile
Print runtime profile at exit (default: False)
--debug
Catch exceptions in debugger (requires ipdb) (default: False)
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