SWAPHI: Smith-Waterman on Intel Xeon Phi download for Linux

This is the Linux app named SWAPHI: Smith-Waterman on Intel Xeon Phi whose latest release can be downloaded as swaphi-v1.0.5.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.

 
 

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SWAPHI: Smith-Waterman on Intel Xeon Phi



DESCRIPTION:

The first parallel algorithm to accelerate the Smith-Waterman protein database search on shared-host multiple Intel Xeon Phi coprocessors. By searching against the UniProtKB/TrEMBL database, SWAPHI achieves a performance of up to 58.8 billion cell updates per second (GCUPS) on a single Xeon Phi and up to 228.4 GCUPS on four Xeon Phis.



Audience

Science/Research, Education, Engineering


User interface

.NET/Mono, Console/Terminal


Programming Language

C++, ALGOL 68


Categories

Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/swaphi/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.



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