This is the command hmm2fetch that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
hmm2fetch - retrieve an HMM from an HMM database
SYNOPSIS
hmm2fetch [options] database name
DESCRIPTION
hmm2fetch is a small utility that retrieves an HMM called name from a HMMER model database
called database. in a new format, and prints that model to standard output. For example,
hmm2fetch Pfam rrm retrieves the RRM (RNA recognition motif) model from Pfam, if the
environment variable HMMERDB is set to the location of the Pfam database. The retrieved
HMM file is written in HMMER 2 ASCII format.
The database must have an associated GSI index file. To index an HMM database, use the
program hmm2index.
OPTIONS
-h Print brief help; includes version number and summary of all options, including
expert options.
-n Interpret name as an HMM number instead of a name. Numbering starts at 0. For
example, to fetch the first HMM from an HMM database called foo, you would do
hmm2fetch -n 0 foo.
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