This is the Linux app named iPiG to run in Linux online whose latest release can be downloaded as ipig_r5.zip. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named iPiG to run in Linux online with OnWorks for free.
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SCREENSHOTS:
iPiG to run in Linux online
DESCRIPTION:
iPiG targets the integration of peptide spectrum matches (PSMs) from mass spectrometry (MS)peptide identifications into genomic visualisations provided by genome browser such as the UCSC genome browser (http://genome.ucsc.edu/).
iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in text format and provides results in genome track formats (BED and GFF3 files), which can be easily imported into genome browsers.
For more details about iPiG and it's functionallity, please see
"iPiG: Integrating Peptide Spectrum Matches Into Genome Browser Visualizations"
Mathias Kuhring and Bernhard Y. Renard
(http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0050246)
Audience
Science/Research
User interface
Java Swing, Console/Terminal
Programming Language
Java
This is an application that can also be fetched from https://sourceforge.net/projects/ipig/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.