āĻāĻāĻŋ āĻšāĻ˛ asndisc āĻāĻŽāĻžāĻ¨ā§āĻĄ āĻ¯āĻž āĻāĻŽāĻžāĻĻā§āĻ° āĻāĻāĻžāĻ§āĻŋāĻ āĻŦāĻŋāĻ¨āĻžāĻŽā§āĻ˛ā§āĻ¯ā§āĻ° āĻ āĻ¨āĻ˛āĻžāĻāĻ¨ āĻāĻ¯āĻŧāĻžāĻ°ā§āĻāĻ¸ā§āĻā§āĻļāĻ¨ āĻ¯ā§āĻŽāĻ¨ āĻāĻŦā§āĻ¨ā§āĻā§ āĻ āĻ¨āĻ˛āĻžāĻāĻ¨, āĻĢā§āĻĄā§āĻ°āĻž āĻ āĻ¨āĻ˛āĻžāĻāĻ¨, āĻāĻāĻ¨ā§āĻĄā§āĻ āĻ āĻ¨āĻ˛āĻžāĻāĻ¨ āĻāĻŽā§āĻ˛ā§āĻāĻ° āĻŦāĻž MAC OS āĻ āĻ¨āĻ˛āĻžāĻāĻ¨ āĻāĻŽā§āĻ˛ā§āĻāĻ° āĻŦā§āĻ¯āĻŦāĻšāĻžāĻ° āĻāĻ°ā§ OnWorks āĻĢā§āĻ°āĻŋ āĻšā§āĻ¸ā§āĻāĻŋāĻ āĻĒā§āĻ°āĻĻāĻžāĻ¨āĻāĻžāĻ°ā§āĻ¤ā§ āĻāĻžāĻ˛āĻžāĻ¨ā§ āĻ¯ā§āĻ¤ā§ āĻĒāĻžāĻ°ā§āĨ¤
āĻāĻžāĻ°ā§āĻ¯āĻā§āĻ°āĻŽ:
NAME āĻāĻ°
asndisc - āĻ āĻ¸āĻā§āĻāĻ¤āĻŋāĻ° āĻāĻ¨ā§āĻ¯ ASN.1 āĻā§āĻŦāĻŋāĻ āĻā§āĻ°āĻŽ āĻ°ā§āĻāĻ°ā§āĻĄ āĻĒāĻ°ā§āĻā§āĻˇāĻž āĻāĻ°ā§āĻ¨
āĻ¸āĻžāĻāĻ¨ā§āĻĒāĻŋāĻ¸āĻŋāĻ¸
asndisc [-] [-B] [-C N] [-F] [-I āĻĒāĻĨ] [-L Str] [-N āĻĢāĻžāĻāĻ˛ā§āĻ° āĻ¨āĻžāĻŽ] [-P Str] [-R] [-S] [-T]
[-X āĻĒāĻ°ā§āĻā§āĻˇāĻž] [-Z] [-a Str] [-b] [-c] [-d āĻĒāĻ°ā§āĻā§āĻˇāĻž] [-e āĻĒāĻ°ā§āĻā§āĻˇāĻž] [-f] [-i āĻĢāĻžāĻāĻ˛ā§āĻ° āĻ¨āĻžāĻŽ] [-k] [-l]
[-o āĻĢāĻžāĻāĻ˛ā§āĻ° āĻ¨āĻžāĻŽ] [-p āĻĒāĻĨ] [-r Dir] [-s EXT] [-t] [-u] [-w āĻĢāĻžāĻāĻ˛ā§āĻ° āĻ¨āĻžāĻŽ] [-x Str]
āĻŦāĻ°ā§āĻŖāĻ¨āĻžāĻ
asndisc ASN.1 āĻĢāĻ°āĻŽā§āĻ¯āĻžāĻā§āĻ° āĻā§āĻŦāĻŋāĻ āĻā§āĻ°āĻŽ āĻ°ā§āĻāĻ°ā§āĻĄ āĻĒāĻ°ā§āĻā§āĻˇāĻž āĻāĻ°āĻžāĻ° āĻāĻ¨ā§āĻ¯ āĻāĻāĻāĻŋ āĻāĻŽāĻžāĻ¨ā§āĻĄ-āĻ˛āĻžāĻāĻ¨ āĻā§āĻ˛
āĻ āĻ¸āĻā§āĻāĻ¤āĻŋ
āĻŦāĻŋāĻāĻ˛ā§āĻĒ
āĻŦāĻŋāĻāĻ˛ā§āĻĒāĻā§āĻ˛āĻŋāĻ° āĻāĻāĻāĻŋ āĻ¸āĻžāĻ°āĻžāĻāĻļ āĻ¨ā§āĻā§ āĻ āĻ¨ā§āĻ¤āĻ°ā§āĻā§āĻā§āĻ¤ āĻāĻ°āĻž āĻšāĻ¯āĻŧā§āĻā§āĨ¤
- āĻĒā§āĻ°āĻŋāĻ¨ā§āĻ āĻŦā§āĻ¯āĻŦāĻšāĻžāĻ° āĻŦāĻžāĻ°ā§āĻ¤āĻž
-B āĻŦāĻŋāĻ āĻ¸āĻŋāĻā§āĻ¯āĻŧā§āĻ¨ā§āĻ¸ āĻ°āĻŋāĻĒā§āĻ°ā§āĻ
-C N āĻ¸āĻ°ā§āĻŦāĻžāĻ§āĻŋāĻ āĻāĻŖāĻ¨āĻž
-F āĻĒāĻŖā§āĻ¯ā§āĻ° āĻ¨āĻžāĻŽā§āĻ° āĻ¤āĻžāĻ˛āĻŋāĻāĻž āĻ āĻŋāĻ āĻāĻ°ā§āĻ¨
-I āĻĒāĻĨ
āĻāĻ¨āĻĄā§āĻā§āĻ¸āĻĄ āĻŦāĻžāĻāĻ¨āĻžāĻ°āĻŋ ASN.1 āĻĄā§āĻāĻžāĻ° āĻĒāĻĨ
-L Str āĻŦā§āĻ¯āĻŦāĻšāĻžāĻ° āĻāĻ°āĻžāĻ° āĻāĻ¨ā§āĻ¯ āĻŦāĻāĻļ
-N āĻĢāĻžāĻāĻ˛ā§āĻ° āĻ¨āĻžāĻŽ
āĻĒāĻ°ā§āĻā§āĻˇāĻž āĻāĻ°āĻžāĻ° āĻāĻ¨ā§āĻ¯ āĻĒāĻŖā§āĻ¯ā§āĻ° āĻ¨āĻžāĻŽā§āĻ° āĻ¤āĻžāĻ˛āĻŋāĻāĻž āĻ¸āĻš āĻĢāĻžāĻāĻ˛ āĻāĻ°ā§āĻ¨
-P Str āĻĒā§āĻ°āĻ¤āĻŋāĻŦā§āĻĻāĻ¨ā§āĻ° āĻĒā§āĻ°āĻāĻžāĻ°
g āĻāĻŋāĻ¨ā§āĻŽ
b āĻŦāĻĄāĻŧ āĻā§āĻ°āĻŽ
m MegaReport
t āĻā§āĻ¯āĻžāĻ āĻ āĻ¨ā§āĻ¤āĻ°ā§āĻā§āĻā§āĻ¤ āĻāĻ°ā§āĻ¨
āĻ¸ā§āĻĒāĻžāĻ° āĻŦā§āĻ¯āĻŦāĻšāĻžāĻ°āĻāĻžāĻ°ā§āĻ° āĻāĻ¨ā§āĻ¯ āĻā§āĻ¯āĻžāĻ
-R āĻāĻāĻĄāĻŋ āĻĨā§āĻā§ āĻ°āĻŋāĻŽā§āĻ āĻāĻ¨āĻž āĻšāĻā§āĻā§
-S āĻ¸āĻžāĻ°āĻ¸āĻāĻā§āĻˇā§āĻĒ āĻĒā§āĻ°āĻ¤āĻŋāĻŦā§āĻĻāĻ¨
-T āĻĨā§āĻ°ā§āĻĄ āĻŦā§āĻ¯āĻŦāĻšāĻžāĻ° āĻāĻ°ā§āĻ¨
-X āĻĒāĻ°ā§āĻā§āĻˇāĻž
āĻĒā§āĻ°āĻ¤āĻŋāĻŦā§āĻĻāĻ¨ā§āĻ° āĻŦāĻŋāĻāĻžāĻāĻā§āĻ˛āĻŋ āĻĒā§āĻ°āĻ¸āĻžāĻ°āĻŋāĻ¤ āĻāĻ°ā§āĻ¨ (āĻ¨āĻŋāĻā§ āĻ¤āĻžāĻ˛āĻŋāĻāĻžāĻā§āĻā§āĻ¤ āĻĒāĻ°ā§āĻā§āĻˇāĻžāĻ° āĻ¨āĻžāĻŽā§āĻ° āĻāĻŽāĻž āĻĻā§āĻŦāĻžāĻ°āĻž āĻ¸ā§āĻŽāĻžāĻŦāĻĻā§āĻ§ āĻ¤āĻžāĻ˛āĻŋāĻāĻž āĻŦāĻž
āĻ¸āĻŦ)āĨ¤
-Z āĻĻā§āĻ°āĻŦāĻ°ā§āĻ¤ā§ CDS āĻĒāĻŖā§āĻ¯ āĻāĻ¨āĻž
-a Str ASN.1 āĻĒā§āĻ°āĻāĻžāĻ°
āĻā§āĻ¨ā§ (āĻĄāĻŋāĻĢāĻ˛ā§āĻ)
e seq-āĻāĻ¨ā§āĻā§āĻ°āĻŋ
b Bioseq
s āĻŦāĻžāĻ¯āĻŧā§āĻ¸ā§āĻ-āĻ¸ā§āĻ
m seq-subMit
t baTch āĻŦāĻžāĻ¯āĻŧā§āĻ¸ā§āĻ-āĻ¸ā§āĻ
u āĻŦā§āĻ¯āĻžāĻ seq-Submit
-b āĻŦā§āĻ¯āĻžāĻ āĻĢāĻžāĻāĻ˛āĻāĻŋ āĻŦāĻžāĻāĻ¨āĻžāĻ°āĻŋ
-c āĻŦā§āĻ¯āĻžāĻ āĻĢāĻžāĻāĻ˛ āĻ¸āĻāĻā§āĻāĻŋāĻ¤ āĻšāĻ¯āĻŧ
-d Str āĻĒāĻ°ā§āĻā§āĻˇāĻžāĻā§āĻ˛āĻŋ āĻ āĻā§āĻˇāĻŽ āĻāĻ°ā§āĻ¨ (āĻ¨āĻŋāĻā§ āĻ¤āĻžāĻ˛āĻŋāĻāĻžāĻā§āĻā§āĻ¤ āĻĒāĻ°ā§āĻā§āĻˇāĻžāĻ° āĻ¨āĻžāĻŽā§āĻ° āĻāĻŽāĻž āĻĻā§āĻŦāĻžāĻ°āĻž āĻ¸ā§āĻŽāĻžāĻŦāĻĻā§āĻ§ āĻ¤āĻžāĻ˛āĻŋāĻāĻž)āĨ¤
-e Str āĻĒāĻ°ā§āĻā§āĻˇāĻž āĻ¸āĻā§āĻˇāĻŽ āĻāĻ°ā§āĻ¨ (āĻ¨āĻŋāĻā§ āĻ¤āĻžāĻ˛āĻŋāĻāĻžāĻā§āĻā§āĻ¤ āĻĒāĻ°ā§āĻā§āĻˇāĻžāĻ° āĻ¨āĻžāĻŽā§āĻ° āĻāĻŽāĻž āĻĻā§āĻŦāĻžāĻ°āĻž āĻ¸ā§āĻŽāĻžāĻŦāĻĻā§āĻ§ āĻ¤āĻžāĻ˛āĻŋāĻāĻž)āĨ¤
-f āĻŦā§āĻļāĻŋāĻˇā§āĻā§āĻ¯ āĻā§āĻŦāĻŋāĻ˛ āĻāĻāĻāĻĒā§āĻ āĻŦāĻŋāĻ¨ā§āĻ¯āĻžāĻ¸ āĻŦā§āĻ¯āĻŦāĻšāĻžāĻ° āĻāĻ°ā§āĻ¨
-i āĻĢāĻžāĻāĻ˛ā§āĻ° āĻ¨āĻžāĻŽ
āĻāĻāĻ āĻāĻ¨āĻĒā§āĻ āĻĢāĻžāĻāĻ˛ (āĻĄāĻŋāĻĢāĻ˛ā§āĻāĻ°ā§āĻĒā§ āĻ¸ā§āĻā§āĻ¯āĻžāĻ¨ā§āĻĄāĻžāĻ°ā§āĻĄ āĻāĻ¨āĻĒā§āĻ)
-k āĻ¸ā§āĻĨāĻžāĻ¨ā§āĻ¯āĻŧ āĻāĻ¨āĻ¯āĻŧāĻ¨
-l āĻāĻāĻžāĻŽ āĻāĻĒāĻžāĻĻāĻžāĻ¨ āĻ˛ā§āĻĄ
-o āĻĢāĻžāĻāĻ˛ā§āĻ° āĻ¨āĻžāĻŽ
āĻāĻāĻ āĻāĻāĻāĻĒā§āĻ āĻĢāĻžāĻāĻ˛
-p āĻĒāĻĨ
ASN.1 āĻĢāĻžāĻāĻ˛ā§āĻ° āĻĒāĻĨ
-r Dir āĻāĻāĻāĻĒā§āĻ āĻĄāĻŋāĻ°ā§āĻā§āĻāĻ°āĻŋ
-s EXT āĻāĻāĻāĻĒā§āĻ āĻĢāĻžāĻāĻ˛ āĻĒā§āĻ°āĻ¤ā§āĻ¯āĻ¯āĻŧ (.āĻĄāĻžāĻ āĻāĻ¤āĻžāĻ¨ā§āĻāĻ¤āĻŋāĻ)
-t āĻŦāĻĄāĻŧ āĻā§āĻ¸ā§āĻ āĻ¸ā§āĻ
-u āĻĒā§āĻ¨āĻ°āĻžāĻŦā§āĻ¤ā§āĻ¤āĻŋ
-w āĻĢāĻžāĻāĻ˛ā§āĻ° āĻ¨āĻžāĻŽ
āĻ¸āĻ¨ā§āĻĻā§āĻšāĻāĻ¨āĻ āĻĒāĻŖā§āĻ¯ āĻ¨āĻŋāĻ¯āĻŧāĻŽ āĻĢāĻžāĻāĻ˛ā§āĻ° āĻ¨āĻžāĻŽ
-x Str āĻĢāĻžāĻāĻ˛ āĻ¨āĻŋāĻ°ā§āĻŦāĻžāĻāĻ¨ āĻ¸āĻžāĻŦāĻ¸ā§āĻā§āĻ°āĻŋāĻ (.sqn āĻāĻ¤āĻžāĻ¨ā§āĻāĻ¤āĻŋāĻ)
āĻāĻĒāĻ˛āĻā§āĻ¯ āĻĒāĻ°ā§āĻā§āĻˇāĻž-āĻ¨āĻŋāĻ°ā§āĻā§āĻˇāĻž
MISSING_GENES, EXTRA_GENES, MISSING_LOCUS_TAGS, DUPLICATE_LOCUS_TAGS,
BAD_LOCUS_TAG_FORMAT, INCONSISTENT_LOCUS_TAG_PREFIX, NON_GENE_LOCUS_TAG,
DISC_COUNT_NUCLEOTIDES, MISSING_PROTEIN_ID, INCONSISTENT_PROTEIN_ID,
FEATURE_LOCATION_CONFLICT, GENE_PRODUCT_CONFLICT, DUPLICATE_GENE_LOCUS, EC_NUMBER_NOTE,
PSEUDO_MISMATCH, JOINED_FEATURES, OVERLAPPING_GENES, OVERLAPPING_CDS, CONTAINED_CDS,
RNA_CDS_OVERLAP, SHORT_CONTIG, INCONSISTENT_BIOSOURCE, SUSPECT_PRODUCT_NAMES,
DISC_PRODUCT_NAME_TYPO, DISC_PRODUCT_NAME_QUICKFIX, INCONSISTENT_SOURCE_DEFLINE,
PARTIAL_CDS_COMPLETE_SEQUENCE, EC_NUMBER_ON_UNKNOWN_PROTEIN, TAX_LOOKUP_MISSING,
TAX_LOOKUP_MISMATCH, SHORT_SEQUENCES, SUSPECT_PHRASES, DISC_SUSPICIOUS_NOTE_TEXT,
COUNT_TRNAS, FIND_DUP_TRNAS, FIND_BADLEN_TRNAS, FIND_STRAND_TRNAS, COUNT_RRNAS,
FIND_DUP_RRNAS, RNA_NO_PRODUCT, TRANSL_NO_NOTE, NOTE_NO_TRANSL, TRANSL_TOO_LONG,
CDS_TRNA_OVERLAP, COUNT_PROTEINS, DISC_FEAT_OVERLAP_SRCFEAT, MISSING_GENPRODSET_PROTEIN,
DUP_GENPRODSET_PROTEIN, MISSING_GENPRODSET_TRANSCRIPT_ID,
DISC_DUP_GENPRODSET_TRANSCRIPT_ID, DISC_PERCENT_N, N_RUNS, ZERO_BASECOUNT,
ADJACENT_PSEUDOGENES, NO_ANNOTATION, DISC_INFLUENZA_DATE_MISMATCH, DISC_SHORT_INTRON,
DISC_MISSING_VIRAL_QUALS, DISC_SRC_QUAL_PROBLEM, DISC_MISSING_SRC_QUAL, DISC_DUP_SRC_QUAL,
DISC_DUP_SRC_QUAL_DATA, DISC_HAPLOTYPE_MISMATCH, DISC_FEATURE_MOLTYPE_MISMATCH,
DISC_CDS_WITHOUT_MRNA, DISC_EXON_INTRON_CONFLICT, DISC_FEATURE_COUNT,
DISC_SPECVOUCHER_TAXNAME_MISMATCH, DISC_GENE_PARTIAL_CONFLICT,
DISC_FLATFILE_FIND_ONCALLER, DISC_CDS_PRODUCT_FIND, DISC_DUP_DEFLINE,
DUP_DISC_ATCC_CULTURE_CONFLICT, DISC_USA_STATE, DISC_INCONSISTENT_MOLTYPES,
DISC_SUBMITBLOCK_CONFLICT, DISC_POSSIBLE_LINKER, DISC_TITLE_AUTHOR_CONFLICT,
DISC_BAD_GENE_STRAND, DISC_MAP_CHROMOSOME_CONFLICT, DISC_RBS_WITHOUT_GENE,
DISC_CITSUBAFFIL_CONFLICT, DISC_REQUIRED_CLONE, DISC_SOURCE_QUALS_ASNDISC,
DISC_mRNA_ON_WRONG_SEQUENCE_TYPE, DISC_RETROVIRIDAE_DNA, DISC_CHECK_AUTH_CAPS,
DISC_CHECK_RNA_PRODUCTS_AND_COMMENTS, DISC_MICROSATELLITE_REPEAT_TYPE,
DISC_MITOCHONDRION_REQUIRED, DISC_UNPUB_PUB_WITHOUT_TITLE, DISC_QUALITY_SCORES,
DISC_INTERNAL_TRANSCRIBED_SPACER_RRNA, DISC_PARTIAL_PROBLEMS,
DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS,
DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_EXCEPTION, DISC_SUSPECT_RRNA_PRODUCTS,
DISC_SUSPECT_MISC_FEATURES, DISC_BACTERIA_MISSING_STRAIN, DISC_MISSING_DEFLINES,
DISC_MISSING_AFFIL, DISC_BACTERIA_SHOULD_NOT_HAVE_ISOLATE,
DISC_BACTERIA_SHOULD_NOT_HAVE_MRNA, DISC_CDS_HAS_NEW_EXCEPTION,
DISC_TRINOMIAL_SHOULD_HAVE_QUALIFIER, DISC_METAGENOMIC, DISC_METAGENOME_SOURCE,
ONCALLER_GENE_MISSING, ONCALLER_SUPERFLUOUS_GENE, DISC_SHORT_RRNA,
ONCALLER_CHECK_AUTHORITY, ONCALLER_CONSORTIUM,
ONCALLER_STRAIN_CULTURE_COLLECTION_MISMATCH, ONCALLER_MULTISRC,
ONCALLER_MULTIPLE_CULTURE_COLLECTION, DISC_SEGSETS_PRESENT, DISC_NONWGS_SETS_PRESENT,
DISC_FEATURE_LIST, DISC_CATEGORY_HEADER, DISC_MISMATCHED_COMMENTS,
DISC_STRAIN_TAXNAME_MISMATCH, DISC_HUMAN_HOST, DISC_BAD_BACTERIAL_GENE_NAME,
TEST_BAD_GENE_NAME, ONCALLER_ORDERED_LOCATION, ONCALLER_COMMENT_PRESENT,
ONCALLER_DEFLINE_ON_SET, ONCALLER_HIV_RNA_INCONSISTENT, SHORT_PROT_SEQUENCES,
TEST_EXON_ON_MRNA, TEST_HAS_PROJECT_ID, ONCALLER_HAS_STANDARD_NAME,
ONCALLER_MISSING_STRUCTURED_COMMENTS, DISC_REQUIRED_STRAIN,
MISSING_GENOMEASSEMBLY_COMMENTS, DISC_BACTERIAL_TAX_STRAIN_MISMATCH,
TEST_CDS_HAS_CDD_XREF, TEST_UNUSUAL_NT, TEST_LOW_QUALITY_REGION,
TEST_ORGANELLE_NOT_GENOMIC, TEST_UNWANTED_SPACER, TEST_ORGANELLE_PRODUCTS,
TEST_SP_NOT_UNCULTURED, TEST_BAD_MRNA_QUAL, TEST_UNNECESSARY_ENVIRONMENTAL,
TEST_UNNECESSARY_VIRUS_GENE, TEST_UNWANTED_SET_WRAPPER, TEST_MISSING_PRIMER,
TEST_UNUSUAL_MISC_RNA, TEST_AMPLIFIED_PRIMERS_NO_ENVIRONMENTAL_SAMPLE,
TEST_DUP_GENES_OPPOSITE_STRANDS, TEST_SMALL_GENOME_SET_PROBLEM, TEST_OVERLAPPING_RRNAS,
TEST_MRNA_SEQUENCE_MINUS_STRAND_FEATURES, TEST_TAXNAME_NOT_IN_DEFLINE,
TEST_COUNT_UNVERIFIED, SHOW_TRANSL_EXCEPT, SHOW_HYPOTHETICAL_CDS_HAVING_GENE_NAME,
TEST_DEFLINE_PRESENT, TEST_MRNA_OVERLAPPING_PSEUDO_GENE, FIND_OVERLAPPED_GENES,
DISC_BIOMATERIAL_TAXNAME_MISMATCH, DISC_CULTURE_TAXNAME_MISMATCH, DISC_CHECK_AUTH_NAME,
NON_RETROVIRIDAE_PROVIRAL, RNA_PROVIRAL, SHORT_SEQUENCES_200, DISC_10_PERCENTN, N_RUNS_14,
MOLTYPE_NOT_MRNA, TECHNIQUE_NOT_TSA, MISSING_STRUCTURED_COMMENT, MISSING_PROJECT,
MULTIPLE_CDS_ON_MRNA, DUP_DISC_CBS_CULTURE_CONFLICT, DIVISION_CODE_CONFLICTS,
RRNA_NAME_CONFLICTS, EUKARYOTE_SHOULD_HAVE_MRNA, MRNA_SHOULD_HAVE_PROTEIN_TRANSCRIPT_IDS,
ONCALLER_COUNTRY_COLON, ONCALLER_BIOPROJECT_ID, ONCALLER_STRAIN_TAXNAME_CONFLICT
onworks.net āĻĒāĻ°āĻŋāĻˇā§āĻŦāĻž āĻŦā§āĻ¯āĻŦāĻšāĻžāĻ° āĻāĻ°ā§ āĻ āĻ¨āĻ˛āĻžāĻāĻ¨ā§ asndisc āĻŦā§āĻ¯āĻŦāĻšāĻžāĻ° āĻāĻ°ā§āĻ¨