This is the command diffseqe that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAMA
diffseq - Compare and report features of two similar sequences
RINGKASAN
diffseq -sebuah urutan urutan -urutan urutan -ukuran kata bilangan bulat
[-globaldifferences boolean] -file keluar melaporkan -kekalahan prestasi -pertandingan prestasi
diffseq -bantu
DESKRIPSI
diffseq adalah program baris perintah dari EMBOSS (“European Molecular Biology Open
Software Suite”). It is part of the "Alignment:Differences" command group(s).
PILIHAN
Memasukkan bagian
-sebuah urutan urutan
-urutan urutan
Wajib bagian
-ukuran kata bilangan bulat
The similar regions between the two sequences are found by creating a hash table of
'wordsize'd subsequences. 10 is a reasonable default. Making this value larger (20?)
may speed up the program slightly, but will mean that any two differences within
'wordsize' of each other will be grouped as a single region of difference. This value
may be made smaller (4?) to improve the resolution of nearby differences, but the
program will go much slower. Default value: 10
Tambahan bagian
-globaldifferences boolean
Normally this program will find regions of identity that are the length of the
specified word-size or greater and will then report the regions of difference between
these matching regions. This works well and is what most people want if they are
working with long overlapping nucleic acid sequences. You are usually not interested
in the non-overlapping ends of these sequences. If you have protein sequences or short
RNA sequences however, you will be interested in differences at the very ends . It
this option is set to be true then the differences at the ends will also be reported.
Nilai default: N
Keluaran bagian
-file keluar melaporkan
-kekalahan prestasi
File for output of first sequence's features Default value: $(asequence.name).diffgff
-pertandingan prestasi
File for output of second sequence's features Default value: $(bsequence.name).diffgff
Use diffseqe online using onworks.net services
