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bbFilter - Online in the Cloud

Run bbFilter in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command bbFilter that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


bbFilter - this is a part of mauveAligner package

DESCRIPTION


bbFilter <backbone file> <independent dist> <output file> <beast|gp> [<seq1>
<seq2>...<seqN>]
seq index starts at 0.

EXAMPLES


Example:

bbFilter my_alignment.backbone 50 my_feats.bin gp

the above command extracts binary features from "my_alignment.backbone" which are
separated by a minimum of 50nt sequence conserved among all taxa in the alignment. The
output is written to my_feats.bin in genoplast format

Example 2:

bbFilter aln.backbone 100 feats.xml beast 0 1 2 5 6

the above command extracts binary features from "aln.backbone" which are separated by a
minimum of 100nt sequence conserved among genomes 0,1,2,5, and 6 from the alignment. The
output is written to feats.xml in beast format

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