EnglishFrenchSpanish

Ad


OnWorks favicon

biomaj - Online in the Cloud

Run biomaj in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command biomaj that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


biomaj - downloads and transform remote biological data banks

SYNOPSIS


biomaj [-h]

DESCRIPTION


BioMAJ (BIOlogie Mise A Jour) is a workflow engine dedicated
to data synchronization and processing.The Software automates
the update cycle and the supervision of the locally mirrored
databank repository. User must have roots rights to run biomaj.

OPTIONS


-h display the list of commands.

INSTALL


At installation, BioMAJ requires a database to run (MySQL), installer should first create
a database (biomaj_log) and a database user (the one used at installation setup).
The database configuration for biomaj can be set or modified in
/etc/biomaj/db_properties/global.properties.

In the install fails due to a SQL error, the install script must be manually run to
create/upgrade the database:

perl /usr/share/biomaj/sql/migration/update.pl

The script will create/upgrade the database and update the configuration files.

ADMIN USER


A default admin user (admin) is created by the scripts. If using the biomaj-watcher, the
default password (admin) MUST be changed immediatly via the watcher interface.

If only biomaj core is used, password is useless.
.PP

UPGRADE


In the case of a package upgrade, if properly configured, the migration scripts will be
ran automatically at install.
It is possible to run manually the script:
.B See perl /usr/share/biomaj/sql/migration/update.pl -h
for usage.

DATA BANKS


By default, biomaj is configured (data.dir in global.properties) to write banks to
/var/lib/biomaj.

EXAMPLES


Update a bank:
biomaj --update genbank

Show console
biomaj --update genbank --console

Show status:
biomaj --status

EXIT STATUS


biomaj returns a zero exist status if it succeeds, it does not represent the bank update
status.

Use biomaj online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    itop - ITSM  CMDB OpenSource
    itop - ITSM CMDB OpenSource
    IT Operations Portal: a complete open
    source, ITIL, web based service
    management tool including a fully
    customizable CMDB, a helpdesk system and
    a document man...
    Download itop - ITSM CMDB OpenSource
  • 2
    Clementine
    Clementine
    Clementine is a multi-platform music
    player and library organizer inspired by
    Amarok 1.4. It has a fast and
    easy-to-use interface, and allows you to
    search and ...
    Download Clementine
  • 3
    XISMuS
    XISMuS
    ATTENTION: Cumulative update 2.4.3 has
    been released!! The update works for any
    previous 2.x.x version. If upgrading
    from version v1.x.x, please download and
    i...
    Download XISMuS
  • 4
    facetracknoir
    facetracknoir
    Modular headtracking program that
    supports multiple face-trackers, filters
    and game-protocols. Among the trackers
    are the SM FaceAPI, AIC Inertial Head
    Tracker ...
    Download facetracknoir
  • 5
    PHP QR Code
    PHP QR Code
    PHP QR Code is open source (LGPL)
    library for generating QR Code,
    2-dimensional barcode. Based on
    libqrencode C library, provides API for
    creating QR Code barc...
    Download PHP QR Code
  • 6
    Freeciv
    Freeciv
    Freeciv is a free turn-based
    multiplayer strategy game, in which each
    player becomes the leader of a
    civilization, fighting to obtain the
    ultimate goal: to bec...
    Download Freeciv
  • More »

Linux commands

Ad