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bowtie2-inspect - Online in the Cloud

Run bowtie2-inspect in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command bowtie2-inspect that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


bowtie2-inspect - wrapper for bowtie2-inspect-* index

SYNOPSIS


bowtie2-inspect [options]* <bt2_base>

DESCRIPTION


Bowtie 2 version 2.2.6 by Ben Langmead ([email protected], www.cs.jhu.edu/~langmea)

<bt2_base>
bt2 filename minus trailing .1.bt2/.2.bt2

By default, prints FASTA records of the indexed nucleotide sequences to standard
out. With -n, just prints names. With -s, just prints a summary of the index
parameters and sequences. With -e, preserves colors if applicable.

OPTIONS


--large-index
force inspection of the 'large' index, even if a 'small' one is present.

-a/--across <int>
Number of characters across in FASTA output (default: 60)

-n/--names
Print reference sequence names only

-s/--summary
Print summary incl. ref names, lengths, index properties

-e/--bt2-ref
Reconstruct reference from .bt2 (slow, preserves colors)

-v/--verbose
Verbose output (for debugging)

-h/--help
print detailed description of tool and its options

--help print this usage message

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