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bp_nrdbp - Online in the Cloud

Run bp_nrdbp in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command bp_nrdbp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


bp_nrdb.PLS - a script to emulate Warren Gish's nrdb, make a unique sequence database from
a set of input databases

SYNOPSIS


Usage:
bp_nrdb.PLS [options] file1 file2 file3

Alternative usage
bp_nrdb.PLS -p [options] file1 id1 file2 id2 file3 id3

DESCRIPTION


This script will create a unique database of sequences (quasi-nonredundant). The options
are:

-o filename - the filename the db is written (STDOUT by default)
-a filename - the filename to append the db to
-l# - minimum required sequence length
-i - do not check for duplicates
-n# - max number of descriptions to report per seq
-d# - delimiter to use between consecutive descriptions
-p - use database id prefixes from command line

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