This is the command bp_nrdbp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
bp_nrdb.PLS - a script to emulate Warren Gish's nrdb, make a unique sequence database from
a set of input databases
SYNOPSIS
Usage:
bp_nrdb.PLS [options] file1 file2 file3
Alternative usage
bp_nrdb.PLS -p [options] file1 id1 file2 id2 file3 id3
DESCRIPTION
This script will create a unique database of sequences (quasi-nonredundant). The options
are:
-o filename - the filename the db is written (STDOUT by default)
-a filename - the filename to append the db to
-l# - minimum required sequence length
-i - do not check for duplicates
-n# - max number of descriptions to report per seq
-d# - delimiter to use between consecutive descriptions
-p - use database id prefixes from command line
Use bp_nrdbp online using onworks.net services
