This is the command chromostitch.pl that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
chromostitch.pl - Makes stitch files for feeding to geneparse.pl to allow feeding of
multiple chromosomes to programs like murasaki
SYNOPSIS
chromostitch.pl [options] <stitch file> <chromosome1 chromosome2 ... >
Options:
--sort sorts everything
--output=<file> altnerate way of specifying an output file
PARAMETERS
stitch file output file (overwrites)
chromosome1 chromosome2 ... List of chromosome input files
B--output=<file> Alternate way of specifying an output file
B--sort Always sort EVERYTHING. (Allows for nicely sorted lists from sloppy input of
filenames from like multiple directories of *.gbk or something)
DESCRIPTION
Makes stitch files for feeding to geneparse.pl to allow feeding of multiple chromosomes to
programs like murasaki
Use chromostitch.pl online using onworks.net services
