EnglishFrenchSpanish

Ad


OnWorks favicon

einvertede - Online in the Cloud

Run einvertede in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command einvertede that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


einverted - Finds inverted repeats in nucleotide sequences

SYNOPSIS


einverted -sequence seqall -gap integer -threshold integer -match integer
-mismatch integer [-maxrepeat integer] -outfile outfile -outseq seqout

einverted -help

DESCRIPTION


einverted is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Nucleic:Repeats,Nucleic:2D structure" command
group(s).

OPTIONS


Input section
-sequence seqall

Required section
-gap integer
Default value: 12

-threshold integer
Default value: 50

-match integer
Default value: 3

-mismatch integer
Default value: -4

Additional section
-maxrepeat integer
Maximum separation between the start of repeat and the end of the inverted repeat.
Default value: 2000

Output section
-outfile outfile

-outseq seqout
The sequence of the inverted repeat regions without gap characters.

Use einvertede online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    Sardi
    Sardi
    Sardi is a complete restyling and
    optimisation of svg code. 6 choices for
    your applications and 10 kind of folders
    to use in your file manager. The sardi
    icons...
    Download Sardi
  • 2
    LMMS Digital Audio Workstation
    LMMS Digital Audio Workstation
    LMMS is a free cross-platform software
    which allows you to produce music with
    your computer. If you like this project
    consider getting involved in the project
    h...
    Download LMMS Digital Audio Workstation
  • 3
    FreeRTOS Real Time Kernel (RTOS)
    FreeRTOS Real Time Kernel (RTOS)
    FreeRTOS is a market-leading real-time
    operating system (RTOS) for
    microcontrollers and small
    microprocessors. Distributed freely
    under the MIT open source lice...
    Download FreeRTOS Real Time Kernel (RTOS)
  • 4
    Avogadro
    Avogadro
    Avogadro is an advanced molecular
    editor designed for cross-platform use
    in computational chemistry, molecular
    modeling, bioinformatics, materials
    science and ...
    Download Avogadro
  • 5
    XMLTV
    XMLTV
    XMLTV is a set of programs to process
    TV (tvguide) listings and help manage
    your TV viewing, storing listings in an
    XML-based format. There are utilities to
    do...
    Download XMLTV
  • 6
    strikr
    strikr
    Strikr Free Software project. Artifacts
    released under a 'intent based'
    dual license: AGPLv3 (community) and
    CC-BY-NC-ND 4.0 international
    (commercial)...
    Download strikr
  • More »

Linux commands

Ad