This is the command einvertede that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
einverted - Finds inverted repeats in nucleotide sequences
SYNOPSIS
einverted -sequence seqall -gap integer -threshold integer -match integer
-mismatch integer [-maxrepeat integer] -outfile outfile -outseq seqout
einverted -help
DESCRIPTION
einverted is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Nucleic:Repeats,Nucleic:2D structure" command
group(s).
OPTIONS
Input section
-sequence seqall
Required section
-gap integer
Default value: 12
-threshold integer
Default value: 50
-match integer
Default value: 3
-mismatch integer
Default value: -4
Additional section
-maxrepeat integer
Maximum separation between the start of repeat and the end of the inverted repeat.
Default value: 2000
Output section
-outfile outfile
-outseq seqout
The sequence of the inverted repeat regions without gap characters.
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