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elastix - Online in the Cloud

Run elastix in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command elastix that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



elastix - perform image registration


elastix mandatory-args [optional-args]


elastix registers a moving image to a fixed image. The registration-process is specified
in the parameter file.


Call elastix from the command line with mandatory arguments:

-f fixed image

-m moving image

-out output directory

-p parameter file, elastix handles 1 or more "-p"

Optional extra commands:

-fMask mask for fixed image

-mMask mask for moving image

-t0 parameter file for initial transform

-priority set the process priority to high or belownormal (Windows only)

-threads set the maximum number of threads of elastix

The parameter-file must contain all the information necessary for elastix to run properly.
That includes which metric to use, which optimizer, which transform, etc. It must also
contain information specific for the metric, optimizer, transform, ... For a usable
parameter-file, see the website.

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