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extractaligne - Online in the Cloud

Run extractaligne in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command extractaligne that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


extractalign - Extract regions from a sequence alignment

SYNOPSIS


extractalign -sequence seqset -regions range -outseq seqoutall

extractalign -help

DESCRIPTION


extractalign is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment,Data retrieval:Sequence data,Edit" command
group(s).

OPTIONS


Input section
-sequence seqset

Required section
-regions range
Regions to extract. A set of regions is specified by a set of pairs of positions. The
positions are integers. They are separated by any non-digit, non-alpha character.
Examples of region specifications are: 24-45, 56-78 1:45, 67=99;765..888
1,5,8,10,23,45,57,99 Default value: $(sequence.begin)-$(sequence.end)

Output section
-outseq seqoutall

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