extractaligne - Online in the Cloud

PROGRAM:

NAME

extractalign - Extract regions from a sequence alignment

SYNOPSIS

extractalign -sequence seqset -regions range -outseq seqoutall

extractalign -help

DESCRIPTION

extractalign is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment,Data retrieval:Sequence data,Edit" command
group(s).

OPTIONS

Input section
-sequence seqset

Required section
-regions range
Regions to extract. A set of regions is specified by a set of pairs of positions. The
positions are integers. They are separated by any non-digit, non-alpha character.
Examples of region specifications are: 24-45, 56-78 1:45, 67=99;765..888
1,5,8,10,23,45,57,99 Default value: $(sequence.begin)-$(sequence.end)

Output section
-outseq seqoutall

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