This is the command fastaq-capillary_to_pairs that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
fastaq_capillary_to_pairs - Converts file of capillary reads to paired and unpaired files
DESCRIPTION
usage: fastaq_capillary_to_pairs <infile> <outfiles prefix>
Given a file of capillary reads, makes an interleaved file of read pairs (where more than
read from same ligation, takes the longest read) and a file of unpaired reads. Replaces
the .p1k/.q1k part of read names to denote fwd/rev reads with /1 and /2
positional arguments:
infile Name of input fasta/q file
outfiles prefix
Prefix of output files
optional arguments:
-h, --help
show this help message and exit
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