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fastqselect - Online in the Cloud

Run fastqselect in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command fastqselect that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


fastqselect - select fastq sequences in a file

DESCRIPTION


This script selects fastq sequences in a file according to names given in a name file.
Given a FASTQ file (and possibly a FASTQ quality file) and a file with names of reads,
select the sequences from the input FASTQ (and quality file) and writes them to an output
FASTQ.

If fastq quality file is present (same basename, but with .qual appended), then also
selects sequences from there.

Please check out the documentation below for more detailed information.

SYNOPSIS


fastqselect <options>

OPTIONS


-infile
name filename containing all fastq sequences

-name name filename containing all names of sequences to select

-outfile name
filename where to write selcted sequences to

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